姓名：黄建勋（Chien-hsun Huang）
职称：副研究员（Associate Researcher）
电子邮箱：chhuang1981@139.com，huang_ch@fudan.edu.cn
办公地点：复旦大学江湾校区生命科学院G411（Room G411, School of Life Sciences, Jiangwan Campus, Fudan University）
办公电话：021- 31246698
研究方向
系统发育学是生物学研究的基石，唯有依赖可靠的系统发育关系才能开展、连结诸多学科之间的发现与结果，并赋与其进化上的意义。植物身为地球上重大的生命体之一，大约有45万种，然则人类对其的关注与了解十分有限，植物系统发育学工作的开展正是为人类开拓认识植物类群进化历史的过程，具有提升人类正视植物多样性的重要意义与深远影响。本课题组基于系统与进化生物学，生物多样性科学，生物信息学，基因组学和分子遗传学等手段，志在揭示重大植物类群的演化历史，连结了生物多样性与形态进化、基因组重复、古地质气候与地理的变化等相关方面的证据，辅以相关基因家族进化的研究，提高科学界对植物扩展的认识与理解。
Phylogenetics is the cornerstone of biological research. Only by relying on reliable phylogenetic relationships can we explore and connect discoveries and results across various disciplines and impart evolutionary significance. Plants, as one of the major life forms on Earth, comprise approximately 450,000 species. However, human attention and understanding of them are limited. The development of plant systematic phylogenetics is the process of expanding human knowledge of the evolutionary history of plant groups, with significant and far-reaching implications for enhancing human awareness and understanding of plant diversity. Our research group, based on methods such as systematic and evolutionary biology, biodiversity science, bioinformatics, genomics, and molecular genetics, aims to reveal the evolutionary history of major plant groups. This involves connecting evidence related to biodiversity with morphological evolution, genomic duplications, changes in ancient geological climate and geography, and studying the evolution of related gene families. This work contributes to improving the scientific community's understanding of plant diversity expansion.
个人简介
男，2000-2004年就读台湾大学生命科学系，主修植物学，2004年起在台湾大学植物科学研究所为硕博士研究生，2012年获博士学位（中间服兵役），同年在台湾大学任博士后，从事分子遗传学研究植物抗逆基因及相关机制。2013-2016年在复旦大学研究室任博士后，从事系统与进化植物学、生物信息学和基因组学研究；2016聘为复旦大学生物多样性研究所青年副研究员，2018年晋升副研究员，从事系统与进化植物学、生物信息学和基因组学等研究工作。2020年以访问学者身分至美国宾州大学进行合作交流。2023年开始以研究员身分参与对内蒙古大学的援建活动。主持或参与国家自然科学基金重点、面上等科研项目5项，发表SCI收录论文20多篇，其馀论文或著作15篇。
Male, studied in the Department of Life Science at National Taiwan University from 2000 to 2004, majoring in botany. From 2004, pursued a Ph.D. at the Institute of Plant Biology, National Taiwan University, and obtained a Ph.D. degree in 2012 (with an intervening military service). In the same year, worked as a postdoctoral fellow at National Taiwan University, engaging in molecular genetic research on plant stress resistance genes and related mechanisms. From 2013 to 2016, worked as a postdoctoral fellow in a research lab at Fudan University, conducting research in systematic and evolutionary botany, bioinformatics, and genomics. Employed as a young associate researcher at the Institute of Biodiversity, Fudan University, in 2016, and promoted to associate researcher in 2018, engaging in research on systematic and evolutionary botany, bioinformatics, and genomics. In 2020, served as a visiting scholar at the University of Pennsylvania in the United States. Starting from 2023, participated in the assistance project for Inner Mongolia University as a researcher. Principal investigator or participant in 5 key and general research projects funded by the National Natural Science Foundation of China, published over 20 SCI-indexed papers, and authored 15 other papers or works.
授课情况：
现代生命科学导论A，现代生命科学导论C, 普通生物学
Introduction to Modern Biology Science A, Introduction to Modern Biology Science C, General Biology
招生专业：
学术博士/硕士：071300生态学；专业博士：086000生物与医药；专业硕士：0857Z1生态工程
Academic Doctor/Master: 071300 Ecology; Professional Doctor: 086000 Biology and Medicine; Professional Master: 0857Z1 Ecological Engineering
科研项目：
国家自然科学基金委员会，面上项目，32270232，茄科系统重建和进化生物学分析揭示其花果发育进化机理，2023-2026, 主持
国家自然科学基金委员会，面上项目，31970224，基于核基因的葫芦科系统关系重建和相关进化生物学研究，2020-2023，主持
国家自然科学基金委员会，面上项目，31770242，建构高涵盖度的十字花科系统进化关系并分析花果发育及抗逆基因在不同支系中的进化路线，2018- 2019，主持
国家自然科学基金委员会，面上项目，31670209，基于核基因的蔷薇科系统重建及相关进化生物学研究，2017-2020，参加
国家自然科学基金委员会，重大研究计划，91531301，十字花科植物近缘种环境适应性的系统发育基因组学和分子遗传学研究，2016-2018，参加
中国博士后基金，面上二等资助，2014M551316，利用低拷贝核基因研究十字花科族水平上的系统进化关系，2014-2016，主持
General Program of National Natural Science Foundation of China, 32270232, Reconstruction and Evolutionary Biology Analysis of Solanaceae, Revealing the Mechanism of Flower and Fruit Development Evolution, 2023-2026, Principal Investigator
General Program of National Natural Science Foundation of China, 31970224, Reconstruction of Cucurbitaceae Systematic Relationships Based on Nuclear Genes and Related Evolutionary Biology Research, 2020-2023, Principal Investigator
General Program of National Natural Science Foundation of China, 31770242, Construction of High-Coverage Brassicaceae System Evolutionary Relationships and Analysis of Flower and Fruit Development and Antistress Genes in Different Lineages, 2018-2019, Principal Investigator
General Program of National Natural Science Foundation of China, 31670209, Reconstruction and Related Evolutionary Biology Research of Rosaceae Based on Nuclear Genes, 2017-2020, Participant
Key Program of National Natural Science Foundation of China, 91531301, Systematic Phylogenomics and Molecular Genetics Study on Environmental Adaptation of Cruciferous Plants' Closely Related Species, 2016-2018, Participant
China Postdoctoral Science Foundation, Second-Class Funding, 2014M551316, Research on Systematic Evolutionary Relationships of Cruciferous Plants' Family Level Using Low-Copy Nuclear Genes, 2014-2016, Principal Investigator
获奖情况：
2016年复星奖教金杰出奖
2019年全国高校生命科学类微课教学比赛二等奖
2016 Fosun Distinguished Teaching Award
2019 Second Prize in the National University Life Sciences Micro-Lecture Teaching Competition
代表性论文和论著：
2023
Zhang L, Morales-Briones DF, Li Y, Zhang G, Zhang T, Huang C-H, Guo P, Zhang K, Wang Y*, Wang H*, Shang F-D*, Ma H* 2023. Phylogenomics insights into gene evolution, rapid species diversification, and morphological innovation of the apple tribe (Maleae, Rosaceae). New Phytologisthttps://doi.org/10.1111/nph.19175. [SCI] （一区，参与）
Yu Y, Song W, Zhai N, Zhang S, Wang J, Wang S, Liu W, Huang C-H, Ma H, Chai J, Chang F* 2023. PXL1 and SERKs act as receptor–coreceptor complexes for the CLE19 peptide to regulate pollen development. Nature Communications 14: 3307. [SCI]（一区，参与）
Hu R, Li X, Hu Y, Zhang R, Lv Q, Zhang M, Sheng X, Zhao F, Chen Z, Ding Y, Yuan H, Wu X, Xing S, Yan X, Bao F, Wan P, Xiao L, Wang X, Xiao W, Decker EL, van Gessel N, Renault H, Wiedemann G, Horst NA, Haas FB, Wilhelmsson PKI, Ullrich KK, Neumann E, Lv B, Liang C, Du H, Lu H, Gao Q, Cheng Z, You H, Xin P, Chu J, Huang C-H, Liu Y, Dong S, Zhang L, Chen F, Deng L, Duan F, Zhao W, Li K, Li Z, Li X, Cui H, Zhang YE, Ma C, Zhu R, Jia Y, Wang M, Hasebe M, Fu J, Goffinet B, Ma H, Rensing SA, Reski R*, He Y* 2023. Adaptive evolution of the enigmatic Takakia now facing climate change in Tibet. Cell186: 3558-3576.e3517. [SCI]（一区，参与）
Huang J, Xu W, Zhai J, Hu Y, Guo J, Zhang C, Zhao Y, Zhang L, Martine C, Ma H*, Huang C-H* 2023. Nuclear phylogeny and insights into whole-genome duplications and reproductive development of Solanaceae plants. Plant Communications 4: 100595. [SCI]（一区，共同通讯）
Zan T, He Y-T, Zhang M, Yonezawa T, Ma H, Zhao Q-M, Kuo W-Y, Zhang W-J*, Huang C-H* 2023. Phylogenomic analyses of Camellia support reticulate evolution among major clades. Molecular Phylogenetics and Evolution 182: 107744. [SCI]（一区，共同通讯）
2022
Wang B, Luo Q, Li Y, Du K, Wu Z, Li T, Shen W-H, Huang C-H*, Gan J*, Dong A* 2022. Structural insights into partner selection for MYB and bHLH transcription factor complexes. Nature Plants https://doi: 10.1038/s41477-41022-01223-w. [SCI]（一区，共同通讯）
Chen L-Y, Lu B, Morales-Briones DF, Moody ML, Liu F, Hu G-W, Huang C-H*, Chen J-M*, Wang Q-F* 2022. Phylogenomic analyses of Alismatales shed light into adaptations to aquatic environments. Molecular Biology and Evolution 39: msac079. [SCI]（一区，共同通讯）
Liu B-B, Ren C, Kwak M, Hodel RGJ, Xu C, He J, Zhou W-B, Huang C-H, Ma H, Qian G-Z, Hong D-Y*, Wen J* 2022. Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere. Journal of Integrative Plant Biology 64: 1020-1043. [SCI]（一区，参与）
Huang W, Zhang L, Columbus JT, Hu Y, Zhao Y, Tang L, Guo Z, Chen W, McKain M, Bartlett M, Huang C-H, Li D-Z, Ge S, Ma H*. 2022. A well-supported nuclear phylogeny of Poaceae and implications for the evolution of C4 photosynthesis. Molecular Plant 15: 755-777. [SCI]（一区，参与）
Zhang L, Zhu X, Zhao Y, Guo J, Zhang T, Huang W, Huang J, Hu Y, Huang C-H*, Ma H*. 2022. Phylotranscriptomics resolves the phylogeny of Pooideae and uncovers factors for their adaptive evolution. Molecular Biology and Evolution 39: msac026. [SCI]（一区，共同通讯）
2021
郭文钰, 黄建勋*. 影响开花植物物种多样化速率变化的因素探讨. 广西植物, 2021, 41(10): 1707-1718.
Morales-Briones DF*, Gehrke B, Huang C-H, Liston A, Ma H, Marx HE, Tank DC, Yang Y. 2021. Analysis of paralogs in target enrichment data pinpoints multiple ancient polyploidy events in Alchemilla s.l. (Rosaceae). Systematic Biology71: 190-207. [SCI]（一区，参与）
Hu S-H, Lin S-F, Huang Y-C, Huang C-H, Kuo W-Y, Jinn T-L*. 2021. Significance of AtMTM1 and AtMTM2 for mitochondrial MnSOD activation in Arabidopsis. Frontiers in Plant Science 12: 690064. [SCI]（二区，参与）
Zhao Y, Zhang R, Jiang K, Qi J, Hu Y, Guo J, Zhu R, Zhang T, Egan AN, Yi T-S, Huang CH*, Ma H*. 2021. Nuclear phylotranscriptomics and phylogenomics support numerous polyploidization events and hypotheses for the evolution of rhizobial nitrogen-fixing symbiosis in Fabaceae. Molecular Plant 14: 748-773. [SCI]（一区，共同通讯）
@@ 封面文章
Zhang C#, Huang CH#, Liu M, Hu Y, Panero JL, Luebert F, Gao T, Ma H*. 2021. Phylotranscriptomic insight into Asteraceae diversity, polyploidy, and morphological innovation. Journal of Integrative Plant Biology 63: 1273-1293. [SCI]（一区，共同一作）
2020
Guo J, Xu W, Hu Y, Huang J, Zhao Y, Zhang L, Huang CH*, Ma H*. 2020. Phylotranscriptomics in Cucurbitaceae reveal multiple whole-genome duplications and key morphological and molecular innovations. Molecular Plant 13: 1117-1133. [SCI]（一区，共同通讯）
@@ 封面文章，并有专文介绍：
Barrera-Redondo J, Lira-Saade R, Eguiarte LE. 2020. Gourds and tendrils of Cucurbitaceae: how their shape diversity, molecular and morphological novelties evolved via whole-genome duplications. Molecular Plant 13: 1108-1110
Huang CH*, Qi X, Chen D, Qi J, Ma H*. 2020. Recurrent genome duplication events likely contributed to both the ancient and recent rise of ferns. Journal of Integrative Plant Biology 62: 433-455. [SCI]（一区，一作兼共同通讯）
Yang L, Su D, Chang X, Foster CSP, Sun L, Huang CH, Zhou X, Zeng L, Ma H, Zhong B*. 2020. Phylogenomic insights into deep phylogeny of angiosperms based on broad nuclear gene sampling. Plant Communications 1: 100027. [SCI]（一区，参与）
Zhang C, Zhang T, Luebert F, Xiang Y, Huang CH, Hu Y, Rees M, Frohlich MW, Qi J*, Weigend M*, Ma H*. 2020. Asterid phylogenomics/phylotranscriptomics uncover morphological evolutionary histories and support phylogenetic placement for numerous whole-genome duplications. Molecular Biology and Evolution 37: 3188-3210. [SCI]（一区，参与）
2019
Li H, Huang CH, Ma H. 2019. Whole-genome duplications in pear and apple. In: Korban S. (eds). The Pear Genome. Compendium of Plant Genomes. Springer, Cham.（专著，参与）
2018
Qi X, Kuo L-Y, Guo C, Li H, Li Z, Qi J, Wang L, Hu Y, Xiang J, Zhang C, Guo J, Huang CH* and Ma H*. 2018. A well-resolved fern nuclear phylogeny reveals the evolution history of numerous transcription factor families. Molecular Phylogenetics and Evolution 127: 961-977. [SCI] （一区，共同通讯）
2017
Xiang YZ#, Huang CH#, Yi H, Wen J, Li S, Yi T, Chen H, Xiang J*, and Hong M*. 2017. Evolution of Rosaceae fruit types based on nuclear phylogeny in the context of geological times and genome duplication. Molecular Biology and Evolution 34: 262-281. [SCI]（一区，共同一作）
@@ 封面文章，并有专文介绍：
Caspermeyer J (2017) The fruits of life: rose family study leads to new understanding of fruit diversity across geological eras and climates. Molecular Biology and Evolution 34: 505-506
2016
Huang CH, Zhang C, Liu M, Hu Y, Gao T, Qi J*, and Ma H*. 2016. Multiple polyploidization events across Asteraceae with two nested events in the early history revealed by nuclear phylogenomics. Molecular Biology and Evolution 33: 2820-2835. [SCI]（一区，一作）
Huang CH, Sun R, Hu Y, Zeng L, Zhang N, Cai L, Zhang Q, Koch MA, Al-Shehbaz I, Edger PP, Pires JC, Tan DY, Zhong Y, and Ma H*. 2016. Resolution of Brassicaceae phylogeny using nuclear genes uncovers nested radiations and supports convergent morphological evolution. Molecular Biology and Evolution 33: 394-412. [SCI]（一区，一作）
张哲,黄建勋, 戚继*. 基于低拷贝核基因的组分特征研究十字花科植物的系统发生关系. 生物技术通报, 2016, 32(12): 86-95.