戚继

发布者:王诗铭发布时间:2021-06-27浏览次数:477

教师基本信息

姓名:戚继

职称:研究员

职务:

电子邮箱:qij@fudan.edu.cn

办公地点:复旦大学生命科学学院 E401-9

办公电话:021- 31246533

个人网页/课题组主页:


研究方向

主要从事计算生物学相关方向的研究,包括:

1. 基因组序列多态性与减数分裂重组现象研究:结合高通量测序手段和比较基因组学方法研究模式生物基因组的序列多态性;基于亲本和减数分裂子代的基因组差异研究减数分裂重组现象的分子机制。

2. 使用系统发育基因组学相关方法研究基因组多倍化后重复基因的保留与功能分化。

3. 利用高通量测序技术精确预测序列多态性和结构变异等生物信息学算法研究,以解决生物问题为目的推动计算生物学方法的发展。

4. 通过数理统计方法分析微生物基因组的物种特异性特征,有效预测环境微生物的群落构成。


个人简介

男,1977年出生,博士,教授。1995-1999年就读吉林大学物理系,获学士学位;1999-2004就读于中国科学院理论物理研究所,获博士学位;2005-2010年在美国宾州州立大学比较基因组学和生物信息学中心从事博士后研究;2010年受聘复旦大学生命科学学院,先后任副教授、研究员。


授课情况

本科生课程生物信息学


招生专业

生物统计与生物信息


代表性论文和论著

  1. Shengyu Zhou, Yamao Chen, Chunce Guo* and J. Qi* (2020) PhyloMCL: accurate clustering of hierarchical orthogroups guided by phylogenetic relationship and inference of polyploidy events. Methods in Ecology and Evolution 11(8):943-954

  2. Caifei Zhang, Taikui Zhang, Federico Luebert, Yezi Xiang, Yi Hu, Matthew Rees, Michael Frohlich, Claude W. dePamphilis, Ji Qi*, Maximilian Weigend* and Hong Ma*. (2020) Asterid Phylogenomics/Phylotranscriptomics Uncover Morphological Evolutionary Histories and Support Phylogenetic Placement for Numerous Whole-Genome Duplications. Mol. Biol. Evol. 37(11):3188–3210

  3. J. Liu, Q. Lian, Y. Chen and J. Qi* (2019) Amino acid based de Bruijn graph algorithm for identifying complete coding genes from metagenomic and metatranscriptomic short reads. Nucleic Acids Res. 47: e30

  4. H. Wang, C. Guo, H. Ma, and J. Qi* (2019) Reply to Zwaenepoel et al.: meeting the challenges of detecting polyploidy events from transcriptomic data. Mol. Plant 2(2):137-140.

  5. Ren Ren#, Haifeng Wang#, Chunce Guo#, Ning Zhang, Liping Zeng, Yamao Chen, Hong Ma*, Ji Qi* (2018) Widespread whole genome duplications contribute to genome complexity and species diversity in angiosperms. Mol. Plant 11: 414-428.

  6. C.-H. Huang, C. Zhang, M. Liu, Y. Hu, T. Gao, J. Qi,* and Hong Ma* (2016) Multiple polyploidization events across Asteraceae with two nested events in the early history revealed by nuclear phylogenomics. Mol. Biol. Evol. 33: 2820-2835.

  7. H. Li#, Q. Shi#, Z. Zhang, L. Zeng, J. Qi*, and H. Ma*. (2016) Evolution of the LRR-RLK gene family: Ancestral copy number and functional divergence of BAM1 and BAM2 in Brassicaceae. J. Syst. Evol. 54: 204-218.

  8. N. Ye#*, X. Zhang#, M. Miao#, X. Fan, Y. Zheng, D. Xu, J. Wang, L. Zhou, D. Wang, Y. Gao, Y. Wang, W. Shi, P. Ji, D. Li, Z. Guan, C. Shao, Z. Zhuang, Z. Gao, J. Qi*, F. Zhao* (2015) Saccharina genomes provide novel insight into kelp biology. Nat Commun. 6:6986

  9. H. Yang#, F. Chang#*, C. You, J. Cui, G. Zhu, L. Wang, Y. Zheng, J. Qi*, H. Ma* (2015) Whole-genome DNA methylation patterns and complex associations with gene structure and expression during flower development in Arabidopsis. Plant J. 81: 268-281

  10. J. Qi, Y. Chen, G. P. Copenhaver, H. Ma (2014) Detection of genomic variations and DNA polymorphisms and impact on analysis of meiotic recombination and genetic mapping. P Natl Acad Sci U S A. 111: 10007-10012 (IF=9.809)