姜宁

发布者:彭筱葳发布时间:2021-06-27浏览次数:2575

教师基本信息

姓名:姜宁

职称:副教授
办公电话:021-31246712
电子邮箱:ningjiang@fudan.edu.cn
办公地点:江湾校区生命科学学院 G605


个人信息简介

男,198311月出生,计算基因组学博士,复旦大学生命科学学院计算生物学系副教授,硕士研究生导师。2001-2005年就读山东大学本科,2006-2013年在英国伯明翰大学生命科学学院攻读研究生,2008年获硕士学位,2013年获计算基因组学博士学位。20135月到复旦大学生命科学学院任教,先后任师资博士后、青年副研究员、副教授。自2014年起负责承担了国家自然科学基金青年项目、面上项目、卫健委、教育部专项等课题共10项,并以课题骨干参与一项国家科技部‘973’项目,两项国家十三五重大研发计划项目,一项国家十四五重大研发计划项目;已在Developmental CellPNASLeukemiaNature CommunicationsNucleic Acids Research等国际学术专业期刊发表SCI论文20余篇。

主要研究方向

基于二代和三代高通量测序组学大数据的信号处理,数据分析和信息挖掘的方法学和应用研究,通过整合基因组、转录组,表观基因组以及单细胞组学等多维度的组学大数据和临床表型组数据信息,围绕复杂性状表型和人类疾病表型解析其发生、发展中的遗传机制,并开发新的方法学和分析流程。目前,已成功开发出具有独立自主知识产权的简化基因组测序及分析平台、复杂疾病易感基因筛查分析平台、孟德尔遗传疾病PANEL检测分析筛查平台、肿瘤新生抗原分析预测算法平台,上述分析检测技术平台已经在复旦大学附属华山医院、上海市公共卫生临床中心等医院广泛应用于临床和科研。

授课情况

承担本科生和研究生课程:《基因组学和生物信息学》《微阵列芯片和高通量组学数据分析与应用》,《组学数据的统计分析和挖掘》,《生物信息学》课程的教学工作。

招生专业

计算生物学,生物信息学,疾病遗传信息分析

3年代表性成果(2019.06-2022.06

1.Sun S, Jiang Y, Zhang Q, Pan H, Li X, Yang L, Huang M, Wei W, Wang X, Qiu M, Cao L, He H, Yu M, Liu H, Zhao B*, Jiang N*, Li R*, Lin X*. (2022) Znhit1 controls meiotic initiation in male germ cells by coordinating with Stra8 to activate meiotic gene expression. Developmental Cell. 2022 Apr 11;57(7):901-913.e4. doi: 10.1016/j.devcel.2022.03.006. (并列通讯作者)

2.Zhang Y#, Jiang N#, Qi W#, Li T#, Zhang Y, Zhang H, Wu J, Zhu Z, Ai J, Qiu C, Zhang W. (2022) Intra-host SARS-CoV-2 single-nucleotide variants emerged during the early stage of COVID-19 pandemic forecast population fixing mutations. Journal of Infection. 2022 May;84(5):722-746. doi: 10.1016/j.jinf.2022.01.016. (并列第一作者)

3.Ruan QL#, Yang QL#, Gao YX#, Wu J, Lin SR, Zhou JY, Shao LY, Wang S, Liu QQ, Gao Y, Jiang N*, Zhang WH*. (2021) Transcriptional Signatures of Human Peripheral Blood Mononuclear Cells Can Identify the Risk of Tuberculosis Progression from Latent Infection among Individuals with Silicosis. Emerg Microbes Infect. 2021 May 27:1-24. doi: 10.1080/22221751.2021.1915184. Online ahead of print. (并列通讯作者)

4.Ai J#, Zhang H#, Zhou Z#, Weng S#, Huang H#, Wang S, Shao L, Gao Y, Wu J, Ruan Q, Wang F, Jiang N*, Chen J*, Zhang W. (2021) Gene expression pattern analysis using dual-color RT-MLPA and integrative genome-wide association studies of eQTL for tuberculosis suscepitibility. Respiratory Research. 2021 Jan 20;22(1):23. doi: 10.1186/s12931-020-01612-9. (并列通讯作者)

5.Sun S#, Jiang N#, Jiang Y, He Q, He H, Wang X, Yang L, Li R, Liu F, Lin X*, Zhao B*. (2020) Chromatin Remodeler Znhit1 Preserves Hematopoietic Stem Cell Quiescence by Determining the Accessibility of Distal Enhancers. Leukemia. 2020. 2020-07-21, doi: 10.1038/s41375-020-0988-5.(并列第一作者)

6.Pan H#, Jiang N#, Sun S, Jiang H, Xu J, Jiang X, Gao Q, Li L, Wu H, Zheng H, Qi Q, Li T, Zhang M, Zhang L, Wan X, Lin X, Wong J, Shi Q*, Li R*. (2020) UHRF1-repressed 5'-hydroxymethylcytosine is essential for the male meiotic prophase I. Cell Death Diseases. 2020 Feb 21;11(2):142. doi: 10.1038/s41419- 020-2333-3. (并列第一作者)

7.Gao S#, Wang J#, Jiang N#, Zhang S, Wang Y, Zhang J, Li N, Fang Y, Yang L, Chen S, Yan B, Huang T, Kuai B, Wang Y, Chang F, Ren G*. (2020) Hyponastic Leaves 1 Protects pri-miRNAs From Nuclear Exosome Attack. Proc Natl Acad Sci USA. 2020 Jul 7;202007203. doi: 10.1073/pnas.2007203117.(并列第一作者)

8.Zhao B#*, Chen Y#, Jiang N#, Yang L, Sun S, Zhang Y, Wen Z, Ray L, Liu H, Hou G, Lin X*. (2019) Znhit1 controls intestinal stem cell maintenance by regulating H2A.Z incorporation, Nature Communications, 2019, 10:1071. doi.org /10.1038/s41467-019-0906.(并列第一作者)

9.Wang J#, Chen S#, Jiang N#, Li N, Wang X, Li Z, Li X, Liu H, Li L, Yang Y, Ni T, Yu C, Ma J, Zheng B, Ren G*. (2019) Spliceosome disassembly factors ILP1 and NTR1 promote miRNA biogenesis in Arabidopsis thaliana.Nucleic Acids Research. 2019 Jun 19. doi: 10.1093/nar/gkz526. (并列第一作者)

10.Xu J#, Wu J#, Teng X, Cai L, Yuan H, Chen X, Hu M, Wang X, Jiang N*, Chen H*.(2020) Large duplication in LMBR1 gene in a large Chinese pedigree with triphalangeal thumb polysyndactyly syndrome. Am J Med Genet A. 2020 Sep;182(9): 2117-2123.(并列通讯作者)

11.Chen C, Zhang Y, Yu S, Zhou Y, Yang S, Jin J, Chen S, Cui P, Wu J*, Jiang N*, Zhang W*. (2019) Tracking Carbapenem-Producing Klebsiella pneumoniae Outbreak in an Intensive Care Unit by Whole Genome Sequencing. Front Cell Infect Microbiol. 2019 Aug 8;9:281.(并列通讯作者)

12.Li T#, Wu J#, Ruan Q#, Zhang W, Zhang W, Liu P, Pei N, Xi X, Lu S, Jiang N*.(2019) Lessons From the Misdiagnosis of Cryopyrin-Associated Periodic Syndrome as an Infection: Importance of an Early and Precise Diagnosis. J Clin Rheumatol. 2019 Sep 12. doi: 10.1097/RHU.0000000000001179.(通讯作者)

13.Mei J, Jiang N*, Ren G*. (2019) The F-box protein HAWAIIAN SKIRT is required for mimicry target induced microRNA degradation in Arabidopsis. J Integr Plant Biol, 2019 Nov;61(11):1121-1127. doi: 10.1111/jipb.12761.(并列通讯作者)