2015统计基因组学讲习班

发布时间：2015-06-09浏览次数：2469

报名回执表下载：

课程表及讲者课程简介：

Statistical Genomics Workshop

Lecturers:

TPS: Terence Paul Speed (UC Berkeley & WEHI)

WW: Wenyi Wang (UT MD Anderson Cancer Center)

AT: Andrew Teschendorff (UCL & CAS-MPG PICB)

Day 1 (6/24): Statistical methods for analysis of whole-transcriptome data.

9:30-10:30: Removing unwanted variation (TPS)

10:45-11:45: Removing unwanted variation from RNA-seq data (TPS)

Lunch break

1:30-2:30: Normalizing large, heterogeneous datasets in the omics (TPS)

2:45-3:45: Deconvolution of mixed transcriptomes from tumor samples (WW)

Day 2 (6/25): Statistical methods for variant calling in high-throughput sequencing data.

9:30-10:30: Challenges in rare variant calling, what we learned from targeted sequencing studies. (WW)

10:45-11:45: Family-based analysis for calling rare variant in DNA sequencing data (WW)

Lunch break

1:30-2:30: Comparing mutation callers (TPS)

2:45-3:45: Combining mutation callers (TPS)

Day 3 (6/26). Statistical methods for personalized risk assessment in inherited cancer syndromes.

9:30-10:30: Mendelian models. (WW)

10:45-11:45: Challenges in application of Mendelian models to various cancer types. (WW)

Lunch break

12:30-3:00 Lab workshop on two software packages: BayesMendel, and FamSeq (WW)

Day 4 (6/27). Statistical Epigenomics

9:30-10:30: Intra-and inter-sample normalization of Illumina 450k data. (AT)

10:45-11:45: Correction for cellular heterogeneity using devonvolution tools

Lunch break. (AT)

1:30-2:30: General feature selection strategies for EWAS and Cancer Epigenome studies. (AT)

Day 5 (6/28). Statistical Epigenomics

9:30-10:30: Dimensional reduction and clustering of DNA methylation data. (AT)

10:45-11:45: Integration of DNA methylation and gene expression data. (AT)

End of the workshop

Software and links:

For the summer workshop: http://www.picb.ac.cn/compsysg/

Software: